| Pos. | No. | Driver | Type | Lap | Total Time | Delay | Best | Lap | Team | ||
| 1 | 1 | Takahiro Ishihara | KOSMIC | 10 | 6'45.294 | 87.23km/h | 40.270 | 5/10 | TM AUTO SERVICE | ||
| 2 | 11 | Yamada Takeshi | KOSMIC | 10 | 6'45.836 | 0.542 | 40.355 | 5/10 | Briarly RS | ||
| 3 | 33 | Masanori Kato | KART REPUBLIC | 10 | 6'46.164 | 0.870 | 40.197 | 5/10 | Triple-K&MOMOX | ||
| 4 | 8 | Masahiro Zama | KOSMIC | 10 | 6'47.564 | 2.270 | 40.504 | 6/10 | RT Tiara | ||
| 5 | 4 | Kenichi Shimizu | CRG | 10 | 6'48.875 | 3.581 | 40.358 | 6/10 | Lev RT | ||
| 6 | 10 | Hideaki Yajima | KOSMIC | 10 | 6'49.233 | 3.939 | 40.424 | 9/10 | Team August | ||
| 7 | 9 | Nagato Kazuya | SWF | 10 | 6'49.477 | 4.183 | 40.212 | 5/10 | Macs Racing | ||
| 8 | 250 | Junichi Ikikata | Zanardi | 10 | 6'50.400 | 5.106 | 40.603 | 9/10 | OX-Kanto with J.M.P. | ||
| 9 | 71 | Hayafumi Takemoto | TOPKART | 10 | 6'55.936 | 10.642 | 41.022 | 3/10 | BEMAX RACING | ||
| 10 | 36 | Kazuhiro Akiyoshi | birelART | 10 | 6'56.929 | 11.635 | 41.174 | 2/10 | Team Layland Fukushima | ||
| 11 | 49 | Kawasaki Akira | TONYKART | 10 | 6'57.310 | 12.016 | 40.777 | 3/10 | WISE Karting team | ||
| 12 | 31 | Masahiko Sasaki | CRG | 10 | 6'57.526 | 12.232 | 40.871 | 4/10 | RT-ANNY | ||
| 13 | 17 | Mobility Resort Motegi | birelART | 10 | 6'57.831 | 12.537 | 40.722 | 6/10 | Macs Racing | ||
| 14 | 95 | Katsuyuki Tanaka | TECNO | 10 | 7'03.971 | 18.677 | 40.705 | 4/10 | TEAM AKASAKA | ||
| 15 | 155 | Tadashi Noguchi | TONYKART | D.N.S | J TRIC with J.M.P. |