| Pos. | No. | Driver | Type | Time | Delay | Gap | Lap | Team | |||
| 1 | 29 | Takashi Matsui | KOSMIC | 41.573 | 85.04km/h | 7/9 | KAZO RACING | ||||
| 2 | 001 | Junichi Ikikata | ZANARDI | 41.897 | 0.324 | 0.324 | 9/9 | OX-Kanto with J.M.P. | |||
| 3 | 12 | Takahiro Ishihara | TONY KART | 42.894 | 1.321 | 0.997 | 6/9 | RF aoyama | |||
| 4 | 21 | Hideaki Yajima | KOSMIC | 43.413 | 1.840 | 0.519 | 3/4 | Team August | |||
| 5 | 2 | Takahiro Takayama | TONYKART | 43.927 | 2.354 | 0.514 | 2/7 | Harnakart Club | |||
| 6 | 3 | Kenichi Shimizu | CRG | 44.513 | 2.940 | 0.586 | 2/4 | Lev RT | |||
| 7 | 11 | Yamada Takeshi | INTREPID | 44.576 | 3.003 | 0.063 | 3/4 | Briarly RS | |||
| 8 | 103 | Tadashi Toyama | TONYKART | 44.713 | 3.140 | 0.137 | 4/6 | J TRIC with J.M.P. | |||
| 9 | 16 | Masahiro Zama | CRG | 44.795 | 3.222 | 0.082 | 4/7 | RT-TIARA | |||
| 10 | 37 | Hiroshi Takahashi | TONYKART | 44.903 | 3.330 | 0.108 | 2/10 | FORZA Racing | |||
| 11 | 71 | Hayafumi Takemoto | TOPKART | 44.913 | 3.340 | 0.010 | 2/7 | BEMAX RACING | |||
| 12 | 15 | Noboru Watanabe | birel | 44.934 | 3.361 | 0.021 | 2/6 | Team Effegala | |||
| 13 | 49 | Kawasaki Akira | FK | 45.183 | 3.610 | 0.249 | 4/7 | WISE Karting Team | |||
| 14 | 13 | Hiroshi Kobayashi | TONYKART | 45.467 | 3.894 | 0.284 | 2/5 | RT OBI | |||
| 15 | 108 | Tadashi Noguchi | ZANARDI | 46.177 | 4.604 | 0.710 | 3/8 | J TRIC with J.M.P. | |||
| 16 | 87 | Shunbun Kajimura | ZANARDI | 46.192 | 4.619 | 0.015 | 3/8 | J TRIC with J.M.P. | |||
| Vehicles that have passed the qualifying round: | |||||||||||