| Pos. | No. | Rider | Type | Time | Delay | Gap | Lap | Team | ||||
| 1 | 4 | Kosuke Akiyoshi | CBR1000RR | 1'50.385 | 156.59km/h | 3/6 | F.C.C.TSR Honda | |||||
| 2 | 1 | Katsuyuki Nakasuga | YZF-R1 | 1'50.510 | 0.125 | 0.125 | 3/4 | Yamaha YSP Racing Team | ||||
| 3 | 12 | Takuya Tsuda | GSX-R1000L3 | 1'51.044 | 0.659 | 0.534 | 7/8 | Yoshimura Suzuki Racing Team | ||||
| 4 | 87 | Yanagawa Akira | ZX-10R | 1'51.057 | 0.672 | 0.013 | 6/7 | TEAM GREEN | ||||
| 5 | 71 | Kagayama Masatoshi | GSX-R1000 | 1'51.175 | 0.790 | 0.118 | 6/6 | Team KAGAYAMA | ||||
| 6 | 33 | Takuya Fujita | YZF-R1 | 1'51.621 | 1.236 | 0.446 | 5/6 | DOGFIGHTRACING・YAMAHA | ||||
| 7 | 104 | Tatsuya Yamaguchi | CBR1000RR | 1'51.638 | 1.253 | 0.017 | 3/7 | TOHO Racing with MORIWAKI | ||||
| 8 | 50 | Kazuki Watanabe | ZX-10R | 1'51.913 | 1.528 | 0.275 | 5/8 | TEAM GREEN | ||||
| 9 | 22 | Yukimi Shimizu | CBR1000RR | 1'52.397 | 2.012 | 0.484 | 5/5 | Honda Dream Takasaki B'WISE R.T | ||||
| 10 | 634 | Takashi Takumi | CBR1000RR | 1'56.432 | 6.047 | 4.035 | 2/3 | MuSASHiRT Hulk Pro | ||||
| Top 10 challenges have been decided. | ||||||||||||
| 11 | 32 | Yukihisa Konno | GSX-R1000L3 | 1'53.028 | 2.643 | 17/19 | MotoMap SUPPLY | |||||
| 12 | 17 | Yasuda Takeshi | CBR1000RR | 1'54.899 | 4.514 | 1.871 | 8/17 | Honda Suzuka Racing Team | ||||
| 13 | 16 | Mitsuhiro Yoshida | CBR1000RR | 1'55.138 | 4.753 | 0.239 | 11/14 | Honda Kumamoto Racing | ||||
| 14 | 29 | Masayuki Yamanaka | CBR1000RR | 1'55.733 | 5.348 | 0.595 | 5/16 | HondaQCT Meijiwa Racing | ||||
| 15 | 21 | Kuboyama Masaaki | CBR1000RR | 1'55.869 | 5.484 | 0.136 | 9/15 | Honda Hamatomo Club Hamamatsu Escargot | ||||
| 16 | 83 | Takayuki Nakazawa | YZF-R1 | 1'56.089 | 5.704 | 0.220 | 14/15 | DOG FIGHT RACING・YAMAHA | ||||
| 17 | 27 | Sawamura Motoaki | YZF-R1 | 1'56.183 | 5.798 | 0.094 | 3/14 | Iwata Racing Family | ||||
| 18 | 68 | Yusuke Shimizu | GSX-R1000 | 1'56.358 | 5.973 | 0.175 | 3/18 | Hamamatsu Team Titan | ||||
| 19 | 6 | Yoshiyuki Sugai | 1199 Panigale S | 1'56.625 | 6.240 | 0.267 | 17/17 | Team SUGAI Racing Japan | ||||
| 20 | 55 | Shinya Harada | S1000RR | 1'56.847 | 6.462 | 0.222 | 15/15 | TEAM Tras&MCR | ||||
| 21 | 40 | Koji Sato | GSX-R1000 | 1'56.906 | 6.521 | 0.059 | 11/17 | Fresh Town Dental Clinic Motegi Alpha | ||||
| 22 | 23 | Hiroshi Harada | ZX-10R | 1'57.106 | 6.721 | 0.200 | 9/11 | RS Garage Harada Himeji | ||||
| 23 | 77 | Tsuyoshi Koga | GSX-R1000L2 | 1'57.717 | 7.332 | 0.611 | 16/16 | S Supply + Ichihara 2 Rin Kan | ||||
| 24 | 53 | Yasuhiko Ohashi | CBR1000RR | 1'57.804 | 7.419 | 0.087 | 3/18 | Honda Midoriyokai Kumamoto Racing | ||||
| 25 | 54 | Keiichi Honda | CBR1000RR | 1'57.864 | 7.479 | 0.060 | 14/17 | HONDA EG RACING | ||||
| 26 | 26 | Takahiko Onuki | CBR1000RR | 1'58.042 | 7.657 | 0.178 | 4/15 | Rocket Kerotan + Neoraguna | ||||
| 27 | 70 | Shinichiro Sato | GSX-R1000 K9 | 1'58.522 | 8.137 | 0.480 | 5/12 | Sato Family Racing | ||||
| 28 | 51 | Yutaka Nakane | YZF-R1 | 1'58.634 | 8.249 | 0.112 | 13/15 | Nakamura Engine Research Institute | ||||
| 29 | 46 | Yoshi Nakamura | 1190RC8R | 1'58.715 | 8.330 | 0.081 | 3/16 | Rental Bike Yokohama Marutomi Auto | ||||
| 30 | 62 | Hiroshi Shiobara | GSX-R1000L2 | 1'58.738 | 8.353 | 0.023 | 14/15 | S.SUPPLY&Oyaji Group | ||||
| 31 | 34 | Kenji Inoue | CBR1000RR | 1'58.862 | 8.477 | 0.124 | 11/17 | Flame | ||||
| 32 | 37 | Atsushi Kikuchi | CBR1000RR | 1'59.057 | 8.672 | 0.195 | 14/16 | TEAM・WILD☆HEART | ||||
| Above, decided at Q1 | ||||||||||||
| Above Qualified Vehicles | ||||||||||||
| 93 | Hironori Kono | CBR1000RR | 2'03.357 | 12.972 | 4.300 | 4/5 | CLUB NEXT | |||||
| 84 | Kita Daigaku | 1199Panigale | 2'05.503 | 15.118 | 2.146 | 4/12 | (Available) Narita Comprehensive Service + Stratos | |||||