| Pos. | No. | Driver | Type | Team | Time | Delay | Gap | Lap | ||
| 1 | 68 | Hasegawa Aya | SPiRiT | RS Motegi | 41.647 | 88.18km/h | 5/6 | |||
| 2 | 6 | Hironori Fukuda | birel | Harnakart Club | 41.742 | 0.095 | 0.095 | 5/6 | ||
| 3 | 1 | Ryo Takada | birel | T.KBF | 41.758 | 0.111 | 0.016 | June 6 | ||
| 4 | 13 | Hayabuta Satoshi | birel | Maxima Technical Sports | 41.764 | 0.117 | 0.006 | June 6 | ||
| 5 | 11 | Tsumura Tomoaki | birel | Team Effegala | 41.879 | 0.232 | 0.115 | 3/5 | ||
| 6 | 4 | Kawaguchi Akira | birel | Team Effegala | 41.943 | 0.296 | 0.064 | 5/6 | ||
| 7 | 7 | Yamada Hideki | Sodi | Granberry | 41.975 | 0.328 | 0.032 | 5/6 | ||
| 8 | 12 | Takamasa Adachi | birel | Team Effegala | 42.057 | 0.410 | 0.082 | 3/5 | ||
| 9 | 18 | Yoshioka Kazunari | WILD KART | SPS Kawaguchi | 42.163 | 0.516 | 0.106 | 5/6 | ||
| 10 | 77 | Takuya Matsumoto | birel | Team Effegala | 42.185 | 0.538 | 0.022 | 5/6 | ||
| 11 | 24 | Toshihiro Sekiguchi | T.KBF | 42.190 | 0.543 | 0.005 | June 6 | |||
| 12 | 26 | Souta Itagaki | birel | Team Layland Fukushima | 42.221 | 0.574 | 0.031 | 4/6 | ||
| 13 | 15 | Yamakawa Nanya | KOSMIC | RL Astec | 42.237 | 0.590 | 0.016 | June 6 | ||
| 14 | 16 | Ryo Yamada | SPiRiT | Garage C | 42.499 | 0.852 | 0.262 | 5/6 | ||
| 15 | 27 | Masataka Tsukioka | birel | Team Effegala | 42.576 | 0.929 | 0.077 | June 6 | ||
| 16 | 17 | Itoyoshi Ryo | CRG | RacingSquareGEN | 42.934 | 1.287 | 0.358 | 5/6 | ||
| 17 | 19 | Juichiro Ota | CRG | RS Motegi | 43.016 | 1.369 | 0.082 | 5/6 | ||
| 18 | 14 | Kyohei Yamamoto | INTREPID | Team Feather | 43.074 | 1.427 | 0.058 | 4/6 | ||
| Ranking Certification (No Print) | ||||||||||