| Pos | No. | Name | Time | Delay | Gap | Lap | Type | Team | ||
| 1 | 3 | Tatsuya Yamaguchi | 1'52.207 | 154.05Km/h | 6/8 | CBR1000RR | Moriwaki MOTUL Racing | |||
| 2 | 76 | Atsushi Watanabe | 1'52.616 | 0.409 | 0.409 | 7/8 | GSX-R1000 | Yoshimura Suzuki with JOMO | ||
| 3 | 83 | Naoya Moriwaki | 1'52.812 | 0.605 | 0.196 | 7/8 | CBR1000RR | Moriwaki MOTUL Racing | ||
| 4 | 9 | Katsuyuki Nakasuga | 1'52.841 | 0.634 | 0.029 | 7/8 | YZF-R1 | YSP&PRESTO Racing | ||
| 5 | 81 | Noriaki Abe | 1'53.058 | 0.851 | 0.217 | 8/8 | YZF-R1 | Wise Gear Racing | ||
| 6 | 10 | Kameya Nagajun | 1'53.244 | 1.037 | 0.186 | 7/8 | CBR1000RR | Team Sakurai Honda | ||
| 7 | 87 | Yanagawa Akira | 1'53.292 | 1.085 | 0.048 | 6/8 | ZX-10R | TEAM GREEN | ||
| 8 | 4 | Kosuke Akiyoshi | 1'53.669 | 1.462 | 0.377 | 5/7 | GSX-R1000K7 | WINs SUZUKI R.T | ||
| 9 | 54 | Tokudome Kazuki | 1'53.726 | 1.519 | 0.057 | 7/8 | CBR1000RR | Honda Dream Infinity RT | ||
| 10 | 73 | Yasuda Takeshi | 1'54.045 | 1.838 | 0.319 | 7/8 | CBR1000RR | team HARC-PRO. | ||
| 11 | 75 | Makoto Osaki | 1'54.272 | 2.065 | 0.227 | 8/8 | YZF-R1 | SP Tadao Racing Team | ||
| 12 | 7 | Tsujimura Takeshi | 1'54.334 | 2.127 | 0.062 | 8/8 | CBR1000RR | F.C.C.TSR | ||
| 13 | 39 | Sakai Daisaku | 1'54.629 | 2.422 | 0.295 | 7/7 | GSX-R1000 | Yoshimura Suzuki with JOMO | ||
| 14 | 48 | Yusuke Teshima | 1'55.050 | 2.843 | 0.421 | 8/8 | CBR1000RR | TEAM HRC | ||
| 15 | 30 | Yuki Hatano | 1'55.150 | 2.943 | 0.100 | 8/8 | GSX-R1000K7 | Moto Map SUPPLY | ||
| 16 | 53 | Yukihisa Konno | 1'55.525 | 3.318 | 0.375 | 6/7 | GSX-R1000K7 | Deotex PANTHERA | ||
| 17 | 71 | Kazuma Tsuda | 1'55.709 | 3.502 | 0.184 | 7/7 | CBR1000RR | Team Sakurai Honda | ||
| 18 | 6 | Exit Repair | 1'55.866 | 3.659 | 0.157 | 7/8 | CBR1000RR | Team OSG & Motorsports | ||
| 19 | 24 | Kanda Shouhei | 1'56.646 | 4.439 | 0.780 | 6/8 | ZX-10R | RS-ITOH&KAZE | ||
| 20 | 11 | Yoshiyuki Sugai | 1'56.768 | 4.561 | 0.122 | 7/8 | CBR1000RR | KEIHINKoharaR.T. | ||
| 21 | 17 | Masayuki Yamanaka | 1'57.493 | 5.286 | 0.725 | 4/4 | CBR1000RR | Tele'Wolfman Yoshiharu MCR | ||
| 22 | 33 | Hideki Matsui | 1'58.601 | 6.394 | 1.108 | 7/8 | CBR1000RR | BATTLE&Mihara Racing | ||
| 23 | 85 | Katsuyoshi Furukawa | 1'59.069 | 6.862 | 0.468 | 5/7 | CBR1000RR | Honda Hamatomo Club Hamamatsu Escargot | ||
| 24 | 23 | Koji Honda | 1'59.383 | 7.176 | 0.314 | 3/5 | GSX-R1000K7 | Marumae Racing Supply | ||
| 25 | 16 | Yoshimasa Kawase | 1'59.398 | 7.191 | 0.015 | 3/6 | GSX-R1000K7 | WINs SUZUKI R.T | ||
| 26 | 21 | Shinji Noyori | 1'59.623 | 7.416 | 0.225 | 7/7 | CBR1000RR | Honda Hamatomo Club Hamamatsu Escargot | ||
| 27 | 704 | Tomoya Nakamura | 2'01.312 | 9.105 | 1.689 | 4/6 | CBR1000RR | Meiwa Racing | ||
| 28 | 35 | Atsuyuki Kobayashi | 2'01.721 | 9.514 | 0.409 | 6/7 | CBR1000RR | Honda Blue Helmet MSC | ||
| 29 | 70 | Hideyoshi Yoshii | 2'02.360 | 10.153 | 0.639 | 3/5 | GSX-R1000 | Fukushima Ophthalmology Clinic teamJUNBO | ||
| 30 | 37 | Shinya Harada | 2'37.867 | 45.660 | 35.507 | 2/3 | CBR1000RR | TEAM D Kanto Funabashi R& Toriko | ||
| 31 | 32 | Hayato Takada | Unable to measure | 0/1 | CBR1000RR | TEAM D Kanto Matsudo R& Toriko |