| Pos | No. | Gr | Name | Time | Delay | Gap | Lap | Type | Team | ||
| 1 | 56 | Asahi Komuro | 2'20.004 | 123.46Km/h | 2/6 | HONDA | TeamProjectμFRS | ||||
| 2 | 5 | Shinichi Furukawa | 2'20.323 | 0.319 | 0.319 | 9/9 | YAMAHA | Team Riding Sports | |||
| 3 | 83 | Yasutomo Nomura | 2'20.327 | 0.323 | 0.004 | 8/8 | HONDA | Moriwaki Club | |||
| 4 | 46 | Tomoya Hoshino | 2'20.450 | 0.446 | 0.123 | 7/7 | SUZUKI | Espal's Dream R or Ranger | |||
| 5 | 14 | Kohara Satoru | 2'20.867 | 0.863 | 0.417 | 8/9 | tm | Team Fred & P Paddock.com | |||
| 6 | 3 | Yoshiharu Okada | 2'20.960 | 0.956 | 0.093 | 9/9 | SUZUKI | MRF & Promatic Eye | |||
| 7 | 2 | Takayoshi Mori | 2'21.028 | 1.024 | 0.068 | 8/8 | HONDA | TEAM PLUS ONE | |||
| 8 | 4 | Akama Kiyoshi | 2'21.159 | 1.155 | 0.131 | 8/8 | HONDA | CLUB HARC-PRO. | |||
| 9 | 1 | Yusuke Yamashita | 2'21.395 | 1.391 | 0.236 | 8/8 | YAMAHA | ZB Ubiquitous R PlusOne | |||
| 10 | 7 | Naoshi Fujita | 2'21.513 | 1.509 | 0.118 | 8/8 | SUZUKI | Team Sugaya Pilota | |||
| 11 | 42 | Ryosuke Nakagi | 2'21.791 | 1.787 | 0.278 | 8/8 | YAMAHA | MIRACLE POWER R | |||
| 12 | 10 | Hiraishi Satoru | 2'22.266 | 2.262 | 0.475 | 8/8 | HONDA | Racing Team Honeybee | |||
| 13 | 68 | Nakamura Kimihiko | 2'22.979 | 2.975 | 0.713 | 6/8 | YAMAHA | IS-P.CC/PrimitiveR | |||
| 14 | 12 | Shigeno Meiji | 2'23.036 | 3.032 | 0.057 | 5/5 | YAMAHA | HOT BANK USA&GET HOT | |||
| 15 | 9 | Tetsuro Abe | 2'23.686 | 3.682 | 0.650 | 8/8 | YAMAHA | Abespi Yamaha & Selco Home | |||
| 16 | 55 | Hiki Tooru | 2'23.688 | 3.684 | 0.002 | 7/8 | HONDA | DyDo MiU Jr. | |||
| 17 | 16 | Tetsu Sakakibara | 2'23.951 | 3.947 | 0.263 | 8/8 | YAMAHA | ZIPBIKE Toyohashi Yubikutsu R | |||
| 18 | 33 | Hironori Kobayashi | 2'24.387 | 4.383 | 0.436 | 4/5 | YAMAHA | Fire Garage & Riding Sports | |||
| 19 | 34 | Yamaguchi Yoshitaka | 2'24.451 | 4.447 | 0.064 | 6/8 | YAMAHA | Team MIKUNI GPmono | |||
| 20 | 15 | Masami Nagata | 2'24.643 | 4.639 | 0.192 | 8/8 | YAMAHA | TW'sRAVE-ON+ZB | |||
| 21 | 30 | Miyoshi Naitaku | 2'26.954 | 6.950 | 2.311 | 8/8 | YAMAHA | Power Pipe Racing | |||
| 22 | 29 | Saito Koda | 2'27.255 | 7.251 | 0.301 | 8/8 | YAMAHA | Power Pipe MRF | |||
| 23 | 26 | Tetsuya Takahashi | 2'27.327 | 7.323 | 0.072 | 8/8 | YAMAHA | Winning Run | |||
| 24 | 88 | Tomohiro Ueda | 2'27.893 | 7.889 | 0.566 | 8/8 | HONDA | Team Life | |||
| 25 | 31 | Norimasa Ogawa | 2'28.458 | 8.454 | 0.565 | 3/3 | HONDA | Hiroshima Kajita Racing | |||
| 26 | 19 | Motegi | 2'28.645 | 8.641 | 0.187 | 7/7 | KAWASAKI | M・A・R・S | |||
| 27 | 35 | Takashi Hamada | 2'29.169 | 9.165 | 0.524 | 8/8 | HONDA | Ubiquitous R PlusOne | |||
| 28 | 27 | Shigeno Osamu | 2'29.467 | 9.463 | 0.298 | 8/8 | YAMAHA | JBS☆Mikuni☆SubcraftR | |||
| 29 | 23 | Takahiro Koyama | 2'30.342 | 10.338 | 0.875 | 8/8 | HONDA | 18 GARAGE RACING TEAM | |||
| 30 | 20 | Ezakiya Gaku | 2'30.417 | 10.413 | 0.075 | 7/7 | YAMAHA | IS-P.CC/PrimitiveR | |||
| 31 | 36 | Yoshinori Nakano | 2'30.997 | 10.993 | 0.580 | 8/8 | HONDA | Again Racing Club! | |||
| 32 | 40 | Yoshijima Masaharu | 2'31.837 | 11.833 | 0.840 | 6/7 | KAWASAKI | YG55&RH Matsushima | |||
| 33 | 32 | Tadataka Ito | 2'32.620 | 12.616 | 0.783 | 8/8 | HONDA | racing ride sports | |||
| 34 | 37 | Fukuoka Daigo | 2'33.207 | 13.203 | 0.587 | 5/7 | KAWASAKI | M・A・R・S | |||
| Vehicles that have passed the qualifying round: | |||||||||||
| 35 | 39 | Takashi Tezuka | 2'35.950 | 15.946 | 2.743 | 7/8 | HONDA | Wolfman Yoshiharu Tele'MCR | |||
| 36 | 52 | Hitoshi Kobata | Unable to measure | 0/1 | HONDA | MOTO WIN RACING | |||||
| 28 | Takashi Baba | Did not participate | SUZUKI | Power Pipe Racing | |||||||
| 38 | Sumie Yasukawa | Did not participate | SUZUKI | MH Matsumoto & Build Works | |||||||