| Pos | * | No. | Name | Time | Delay | Gap | Lap | Type | Team | ||
| 1 | 4 | Takashi Takumi | 1'54.797 | 150.57Km/h | 14/15 | RBB250 | Burning Blood RT | ||||
| 2 | 41 | Yuichi Ui | 1'55.835 | 1.038 | 1.038 | 14/14 | TZ250 | PRO-TEC&Spruce | |||
| 3 | 48 | Tomisawa Shoya | 1'56.106 | 1.309 | 0.271 | 17/18 | RS250 | TeamProjectμFRS | |||
| 4 | 5 | Masato Oikawa | 1'56.636 | 1.839 | 0.530 | 11/13 | TZ250 | Will Access & Plus View | |||
| 5 | 7 | Hiroki Hamamoto | 1'57.758 | 2.961 | 1.122 | 19/19 | TZ250 | TEC2&Feel. Kyushu Kyoritsu University | |||
| 6 | 56 | Yamazaki District | 1'57.777 | 2.980 | 0.019 | 5/10 | TZ250 | HITMAN RC Motegi Yamaha | |||
| 7 | 8 | Takashi Akita | 1'58.087 | 3.290 | 0.310 | 12/16 | TZ250 | HenkelTDRYAMAHA | |||
| 8 | 93 | Takumi Endo | 1'58.466 | 3.669 | 0.379 | 10/14 | TZ250 | PRO-TEC & Niigata Industrial College | |||
| 9 | 19 | Yuki Ito | 1'58.799 | 4.002 | 0.333 | 9/16 | TZ250 | DOG FIGHT RACING | |||
| 10 | 6 | Akitsuya Morimori | 1'59.401 | 4.604 | 0.602 | 10/12 | TZ250 | Team Moto Space | |||
| 11 | 16 | Daikou Sakurai | 2'00.639 | 5.842 | 1.238 | 5/5 | RS250R | KEIHINKoharaR.T. | |||
| 12 | 34 | Riko Oguchi | 2'01.240 | 6.443 | 0.601 | 15/17 | TZ250 | ALLMAN&OW Oguchi Dental Clinic | |||
| 13 | 26 | Shibahara Makoto | 2'01.297 | 6.500 | 0.057 | 18/18 | TZ250 | TeamDankeRacing | |||
| 14 | 65 | Akira Nibe | 2'01.433 | 6.636 | 0.136 | 15/16 | TZ250 | SP-X& Kotobuki Racing | |||
| 15 | 62 | Nakamoto-gun | 2'01.492 | 6.695 | 0.059 | 17/18 | TZ250 | RT・OUTRUN | |||
| 16 | 31 | Kazuki Watanabe | 2'01.528 | 6.731 | 0.036 | 17/18 | TZ250 | TeamDankeRacing | |||
| 17 | 45 | Doni Tata Pradita | 2'01.677 | 6.880 | 0.149 | 8/16 | TZ250 5KE4 | Yamaha Indonesia RT | |||
| 18 | 25 | Fukuyama Kyota | 2'01.747 | 6.950 | 0.070 | 9/11 | TZ250 | TeamDankeRacing | |||
| 19 | 47 | Koguchi Wataru | 2'03.019 | 8.222 | 1.272 | 9/11 | TZ250 | ALLMAN&OWRACING | |||
| 20 | * | 14 | Rei Oikawa | 2'03.089 | 8.292 | 0.070 | 7/7 | TZ250 | Pentagram & �Gama Shou & M-Ra | ||
| 21 | 72 | Kimura Asahi Atsushi | 2'03.181 | 8.384 | 0.092 | 4/5 | TZ250 | PRO-TEC Nihon University Faculty of Engineering Mechanical Research | |||
| 22 | 28 | Hikaru Oshiro | 2'03.855 | 9.058 | 0.674 | 14/15 | RS250R | Oshiro R・Kaneda Industries | |||
| 23 | 36 | Hiroki Iizuka | 2'05.368 | 10.571 | 1.513 | 10/10 | TZ250 | Garage Kokusei & Iizuka Automobile Trading | |||
| 24 | 27 | Kazuki Saito | 2'05.970 | 11.173 | 0.602 | 18/18 | RS250R | Power Pipe MRF | |||
| Vehicles that have passed the qualifying round: | |||||||||||
| 25 | 15 | Hiroshi Toyota | 2'22.773 | 27.976 | 16.803 | 2/5 | TZ250 | D:REX | |||
| 73 | Masahiko Suzuki | Did not participate | TZ250 | INTEGRAL Racing | |||||||
| 92 | Kunikawa Hiromichi | Did not participate | TZ250 | SP Tadao Racing Team | |||||||