| Pos | No. | Name | Time | Delay | Gap | Lap | Type | Team | ||
| 1 | 87 | Yanagawa Akira | 2'03.820 | 139.60Km/h | 7/7 | ZX-10R | TEAM GREEN | |||
| 2 | 10 | Kameya Nagajun | 2'05.475 | 1.655 | 1.655 | 4/5 | CBR1000RR | Team Sakurai Honda | ||
| 3 | 4 | Kosuke Akiyoshi | 2'05.681 | 1.861 | 0.206 | 6/6 | GSX-R1000K7 | WINs SUZUKI R.T | ||
| 4 | 76 | Atsushi Watanabe | 2'06.836 | 3.016 | 1.155 | 7/7 | GSX-R1000 | Yoshimura Suzuki with JOMO | ||
| 5 | 3 | Tatsuya Yamaguchi | 2'07.225 | 3.405 | 0.389 | 6/6 | CBR1000RR | Moriwaki MOTUL Racing | ||
| 6 | 83 | Naoya Moriwaki | 2'07.496 | 3.676 | 0.271 | 4/4 | CBR1000RR | Moriwaki MOTUL Racing | ||
| 7 | 9 | Katsuyuki Nakasuga | 2'07.497 | 3.677 | 0.001 | 6/6 | YZF-R1 | YSP&PRESTO Racing | ||
| 8 | 39 | Sakai Daisaku | 2'07.751 | 3.931 | 0.254 | 6/7 | GSX-R1000 | Yoshimura Suzuki with JOMO | ||
| 9 | 48 | Yusuke Teshima | 2'07.886 | 4.066 | 0.135 | 4/4 | CBR1000RR | TEAM HRC | ||
| 10 | 73 | Yasuda Takeshi | 2'08.214 | 4.394 | 0.328 | 6/6 | CBR1000RR | team HARC-PRO. | ||
| 11 | 75 | Makoto Osaki | 2'08.250 | 4.430 | 0.036 | 3/6 | YZF-R1 | SP Tadao Racing Team | ||
| 12 | 54 | Tokudome Kazuki | 2'08.340 | 4.520 | 0.090 | 7/7 | CBR1000RR | Honda Dream Infinity RT | ||
| 13 | 81 | Noriaki Abe | 2'08.826 | 5.006 | 0.486 | 4/7 | YZF-R1 | Wise Gear Racing | ||
| 14 | 17 | Masayuki Yamanaka | 2'09.149 | 5.329 | 0.323 | 5/5 | CBR1000RR | Tele'Wolfman Yoshiharu MCR | ||
| 15 | 53 | Yukihisa Konno | 2'09.423 | 5.603 | 0.274 | 6/7 | GSX-R1000K7 | Deotex PANTHERA | ||
| 16 | 11 | Yoshiyuki Sugai | 2'10.477 | 6.657 | 1.054 | 7/7 | CBR1000RR | KEIHINKoharaR.T. | ||
| 17 | 32 | Hayato Takada | 2'11.224 | 7.404 | 0.747 | 5/7 | CBR1000RR | TEAM D Kanto Matsudo R& Toriko | ||
| 18 | 7 | Tsujimura Takeshi | 2'11.812 | 7.992 | 0.588 | 7/7 | CBR1000RR | F.C.C.TSR | ||
| 19 | 33 | Hideki Matsui | 2'11.858 | 8.038 | 0.046 | 4/5 | CBR1000RR | BATTLE&Mihara Racing | ||
| 20 | 71 | Kazuma Tsuda | 2'11.931 | 8.111 | 0.073 | 6/6 | CBR1000RR | Team Sakurai Honda | ||
| 21 | 85 | Katsuyoshi Furukawa | 2'12.103 | 8.283 | 0.172 | 7/7 | CBR1000RR | Honda Hamatomo Club Hamamatsu Escargot | ||
| Above Round 2 Session Qualifying | ||||||||||
| 22 | 21 | Shinji Noyori | 2'12.161 | 8.341 | 0.058 | 7/7 | CBR1000RR | Honda Hamatomo Club Hamamatsu Escargot | ||
| 23 | 23 | Koji Honda | 2'13.377 | 9.557 | 1.216 | 6/6 | GSX-R1000K7 | Marumae Racing Supply | ||
| 24 | 24 | Kanda Shouhei | 2'14.320 | 10.500 | 0.943 | 7/7 | ZX-10R | RS-ITOH&KAZE | ||
| 25 | 6 | Exit Repair | 2'15.313 | 11.493 | 0.993 | 2/4 | CBR1000RR | Team OSG & Motorsports | ||
| 26 | 16 | Yoshimasa Kawase | 2'15.832 | 12.012 | 0.519 | 4/4 | GSX-R1000K7 | WINs SUZUKI R.T | ||
| 27 | 30 | Yuki Hatano | 2'16.094 | 12.274 | 0.262 | 7/7 | GSX-R1000K7 | Moto Map SUPPLY | ||
| 28 | 37 | Shinya Harada | 2'16.662 | 12.842 | 0.568 | 7/7 | CBR1000RR | TEAM D Kanto Funabashi R& Toriko | ||
| 29 | 35 | Atsuyuki Kobayashi | 2'21.083 | 17.263 | 4.421 | 5/7 | CBR1000RR | Honda Blue Helmet MSC | ||
| 30 | 704 | Tomoya Nakamura | 2'32.724 | 28.904 | 11.641 | 2/2 | CBR1000RR | Meiwa Racing | ||
| 31 | 70 | Hideyoshi Yoshii | Did not participate | GSX-R1000 | Fukushima Ophthalmology Clinic teamJUNBO | |||||