| Pos | No. | Name | Time | Delay | Gap | Lap | Type | Team | ||
| 1 | 10 | Yuuji Sato | 2'12.251 | 130.70Km/h | 9/9 | YZF-R6 | Jubilo Racing Team | |||
| 2 | 8 | Takahashi Hidekuni | 2'12.988 | 0.737 | 0.737 | 5/10 | ZX-6R | TEAM GREEN | ||
| 3 | 37 | Yukari Tomoki | 2'14.409 | 2.158 | 1.421 | 10/11 | GSX-R600 | Yoshimura Suzuki with JOMO | ||
| 4 | 5 | Koji Teramoto | 2'14.640 | 2.389 | 0.231 | 9/9 | GSX-R600K7 | Moto Map VEGA | ||
| 5 | 29 | Takuya Tsuda | 2'14.945 | 2.694 | 0.305 | 10/14 | CBR600RR | Team OSG & Motorsports | ||
| 6 | 27 | Masataro Nakayama | 2'16.749 | 4.498 | 1.804 | 4/4 | CBR600RR | Kohara RC | ||
| 7 | 54 | Tetsugo Inoue | 2'16.878 | 4.627 | 0.129 | 12/13 | ZX-6R | TrickStar Tamiton-R | ||
| 8 | 91 | Daniel Silva | 2'17.937 | 5.686 | 1.059 | 10/10 | GSX-R600K6 | Kentsu J Trust Racing | ||
| 9 | 20 | Satoru Iwata | 2'18.074 | 5.823 | 0.137 | 9/9 | CBR600RR | F.C.C.TSR | ||
| 10 | 69 | Ryuta Kobayashi | 2'19.836 | 7.585 | 1.762 | 7/7 | CBR600RR | Burning Blood RT | ||
| 11 | 33 | Shimochi Shingo | 2'20.945 | 8.694 | 1.109 | 5/8 | ZX-6RR | Ambitious Panasonic LUMIX | ||
| 12 | 76 | Naoki Shimizu | 2'23.350 | 11.099 | 2.405 | 3/9 | ZX-6R | RS-ITOH&KAZE | ||
| 13 | 16 | Masahiko Oishi | 2'24.671 | 12.420 | 1.321 | 4/4 | YZF-R6 | Ito RACING · GMD Suzuka | ||
| 14 | 55 | Eiki Takahashi | 2'27.911 | 15.660 | 3.240 | 2/2 | CBR600RR | DyDo MiU Racing | ||
| 6 | Okuno Masao | Did not participate | YZF-R6 | Ito RACING · GMD Suzuka | ||||||
| 11 | Mori Shin | Did not participate | CBR600RR | team HARC-PRO. | ||||||
| 12 | Hiroki Noda | Did not participate | CBR600RR | Racing Team Honeybee | ||||||
| 15 | Makoto Inagaki | Did not participate | CBR600RR | Burning Blood RT | ||||||
| 17 | Toshiyuki Aragaki | Did not participate | CBR600RR | Team ARA Tiger's Den | ||||||
| 19 | Tatsuo Tsuruta | Did not participate | ZX-6R | TrickStar Tamiton-R | ||||||
| 23 | Norimori Numata | Did not participate | YZF-R6 | HITMAN RC Motegi Yamaha | ||||||
| 25 | Toshio Higashiura | Did not participate | YZF-R6 | Plus Mue Racing Team | ||||||
| 28 | Yukimi Shimizu | Did not participate | CBR600RR | DREAM Takasaki B'WISE RT | ||||||
| 34 | Hidefumi Kawahara | Did not participate | CBR600RR | TEAM PLUS ONE | ||||||
| 38 | Yoshikazu Yasumi | Did not participate | YZF-R6 | DOG FIGHT RACING | ||||||
| 43 | Hideyuki Ikata | Did not participate | GSX-R600 | Espal's Dream Racing | ||||||
| 44 | Yuta Kodama | Did not participate | CBR600RR | DDBOYS Racing | ||||||
| 45 | Michio Izumi | Did not participate | CBR600RR | Honda Dream Kitakyushu RT | ||||||
| 51 | Masahiro Izumimoto | Did not participate | YZF-R6 | RT Mori no Kumasan Sato Juku Sendai | ||||||
| 56 | Takashi Harada | Did not participate | CBR600RR | CLUB HARC-PRO. | ||||||
| 57 | Yokobari Kōkaku | Did not participate | GSX-R600 | SBS Iwata | ||||||
| 58 | Takayuki Oki | Did not participate | CBR600RR | Club HARC-PRO. | ||||||
| 59 | Takakazu Akabane | Did not participate | CBR600RR | |||||||
| 60 | Hiroshi Furuhata | Did not participate | CBR600RR | R.T Honeybee Matsuda Juku | ||||||
| 61 | Yasutaka Kojima | Did not participate | CBR600RR | MC Racing | ||||||
| 62 | Nakahara Naohiro | Did not participate | CBR600RR | Tochigi PG Racing Club | ||||||
| 63 | Yoshihiro Kishimoto | Did not participate | CBR600RR | Yokohama F. Marinos & Ozawa R&D + Matsuda Juku | ||||||
| 65 | Mt. Kosuge | Did not participate | CBR600RR | CLUB HARC-PRO. | ||||||
| 72 | Atsushi Miyazaki | Did not participate | YZF-R6 | DOG FIGHT RACING | ||||||
| 73 | Ryoki Konishi | Did not participate | CBR600RR | team HARC-PRO. | ||||||
| 77 | Shonosuke Oda | Did not participate | CBR600RR | Honda Shop Nagano R·T | ||||||
| 83 | Terao Ono | Did not participate | GSX-R600 | SBS Aizu Light On | ||||||
| 85 | Daisuke Nakajima | Did not participate | ZX-6R | MAX-SPEED | ||||||
| 88 | Yuichi Takeda | Did not participate | CBR600RR | Team Sakurai Honda | ||||||
| 89 | Suma Sadahito | Did not participate | CBR600RR | Honda Dream Kitakyushu RT | ||||||
| 99 | Naoko Takasugi | Did not participate | CBR600RR | Racing Team Honeybee | ||||||
| 705 | Takehiko Kurokawa | Did not participate | CBR600RR | GARAGESPEED Nakamura Eg |